SIGs/SciTech/BioinformaticsWishList

From FedoraProject

< SIGs | SciTech(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
 +
* [http://samtools.sourceforge.net/ SAMtools] - SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments.
 
* [http://maq.sourceforge.net/bwa-man.shtml bwa] - Burrows-Wheeler Alignment Tool  
 
* [http://maq.sourceforge.net/bwa-man.shtml bwa] - Burrows-Wheeler Alignment Tool  
 
* [http://emboss.sourceforge.net/ EMBOSS package] - Hundreds of useful, well documented applications for molecular sequence and other analyses.
 
* [http://emboss.sourceforge.net/ EMBOSS package] - Hundreds of useful, well documented applications for molecular sequence and other analyses.

Revision as of 21:30, 10 July 2009

  • SAMtools - SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments.
  • bwa - Burrows-Wheeler Alignment Tool
  • EMBOSS package - Hundreds of useful, well documented applications for molecular sequence and other analyses.
  • Staden package - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
  • NCBI-BLAST and other tools - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.