SIGs/SciTech/BioinformaticsWishList

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* [http://maq.sourceforge.net/bwa-man.shtml bwa] - Burrows-Wheeler Alignment Tool.
 
* [http://maq.sourceforge.net/bwa-man.shtml bwa] - Burrows-Wheeler Alignment Tool.
* [http://emboss.sourceforge.net/ EMBOSS] - Hundreds of useful, well documented applications for molecular sequence and other analyses.
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* <strike>[http://emboss.sourceforge.net/ EMBOSS]</strike> - Hundreds of useful, well documented applications for molecular sequence and other analyses.
 
* [http://www.chevreux.org/projects_mira.html MIRA] - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats.
 
* [http://www.chevreux.org/projects_mira.html MIRA] - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats.
 
* [ftp://ftp.ncbi.nih.gov/toolbox/ NCBI-BLAST and other tools]  - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
 
* [ftp://ftp.ncbi.nih.gov/toolbox/ NCBI-BLAST and other tools]  - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
* [http://samtools.sourceforge.net/ SAMtools] - SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. Tools for sorting, merging etc. sam format files.
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* <strike>[http://samtools.sourceforge.net/ SAMtools]</strike> - SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. Tools for sorting, merging etc. sam format files.
 
* [http://staden.sourceforge.net/ Staden]  - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
 
* [http://staden.sourceforge.net/ Staden]  - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
 
* [http://www.mygrid.org.uk/tools/taverna/ Taverna] - Tool for automation of experimental workflows.
 
* [http://www.mygrid.org.uk/tools/taverna/ Taverna] - Tool for automation of experimental workflows.

Revision as of 19:24, 6 December 2009

  • bwa - Burrows-Wheeler Alignment Tool.
  • EMBOSS - Hundreds of useful, well documented applications for molecular sequence and other analyses.
  • MIRA - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats.
  • NCBI-BLAST and other tools - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
  • SAMtools - SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. Tools for sorting, merging etc. sam format files.
  • Staden - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
  • Taverna - Tool for automation of experimental workflows.