SIGs/SciTech/BioinformaticsWishList

From FedoraProject

< SIGs | SciTech(Difference between revisions)
Jump to: navigation, search
(Added Cytoscape)
Line 7: Line 7:
 
* [http://staden.sourceforge.net/ Staden]  - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
 
* [http://staden.sourceforge.net/ Staden]  - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
 
* [http://www.mygrid.org.uk/tools/taverna/ Taverna] - Tool for automation of experimental workflows.
 
* [http://www.mygrid.org.uk/tools/taverna/ Taverna] - Tool for automation of experimental workflows.
 +
* [ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/CURRENT/ NCBI C Toolkit ] - NCBI libraries and tools for biology applications [http://www.environnement.ens.fr/perso/dumas/fc-srpms/ncbi-6.1.20081116a-1.fc10.src.rpm srpm here]
 +
* [ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/CURRENT/ NCBI C++ Toolkit ] - a new generation of NCBI libraries and tools for biology
  
 
<noinclude>
 
<noinclude>

Revision as of 08:34, 25 January 2010

  • bwa - Burrows-Wheeler Alignment Tool.
  • Cytoscape - Platform for the analysis and visualization of complex networks, in particular molecular interaction networks and biological pathways
  • EMBOSS - Hundreds of useful, well documented applications for molecular sequence and other analyses.
  • MIRA - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats.
  • NCBI-BLAST and other tools - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
  • SAMtools - SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. Tools for sorting, merging etc. sam format files.
  • Staden - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
  • Taverna - Tool for automation of experimental workflows.
  • NCBI C Toolkit - NCBI libraries and tools for biology applications srpm here
  • NCBI C++ Toolkit - a new generation of NCBI libraries and tools for biology