SIGs/SciTech/BioinformaticsWishList: Difference between revisions

Revision as of 08:34, 25 January 2010

bwa - Burrows-Wheeler Alignment Tool.
Cytoscape - Platform for the analysis and visualization of complex networks, in particular molecular interaction networks and biological pathways
~~EMBOSS - Hundreds of useful, well documented applications for molecular sequence and other analyses.~~
MIRA - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats.
NCBI-BLAST and other tools - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
~~SAMtools - SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. Tools for sorting, merging etc. sam format files.~~
Staden - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
Taverna - Tool for automation of experimental workflows.
NCBI C Toolkit - NCBI libraries and tools for biology applications srpm here
NCBI C++ Toolkit - a new generation of NCBI libraries and tools for biology

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 * [http://staden.sourceforge.net/ Staden]  - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
 * [http://www.mygrid.org.uk/tools/taverna/ Taverna] - Tool for automation of experimental workflows.
+* [ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/CURRENT/ NCBI C Toolkit ] - NCBI libraries and tools for biology applications [http://www.environnement.ens.fr/perso/dumas/fc-srpms/ncbi-6.1.20081116a-1.fc10.src.rpm srpm here]
+* [ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/CURRENT/ NCBI C++ Toolkit ] - a new generation of NCBI libraries and tools for biology
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