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  • Taverna - Tool for automation of experimental workflows.
  • bwa - Burrows-Wheeler Alignment Tool.
  • EMBOSS package - Hundreds of useful, well documented applications for molecular sequence and other analyses.
  • Staden package - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
  • NCBI-BLAST and other tools - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.