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This is to help document the process to get SAGE (http://sagemath.org/), the open-source computer algebra/mathematics framework into Fedora.
+
This is to help document the process to get SageMath (also colloquially called Sage; SAGE is a retired name) (http://www.sagemath.org/), the open-source computer algebra/mathematics framework into Fedora.
  
 
__TOC__
 
__TOC__
== Fedora and other community efforts ==
+
== People ==
  
 
People interested helping in packaging/reviewing:
 
People interested helping in packaging/reviewing:
Line 12: Line 12:
 
* [[NealBecker|Neal Becker]]
 
* [[NealBecker|Neal Becker]]
 
* [[User:Konradm|Conrad Meyer]]
 
* [[User:Konradm|Conrad Meyer]]
 +
* [[User:Danielsmw|Matthew Daniels]]
 +
* [[User:tibbs|Jason Tibbitts]]
 +
* [[User:tomspur|Thomas Spura]]
 +
* [[User:fpmurphy|Finnbarr P. Murphy]]
 +
* [[User:pcpa|Paulo Andrade]]
 +
* [[User:Cicku|Christopher Meng]]
 +
* [[User:lupinix|Christian Dersch]]
 +
* [[User:Mrennekamp|Matthew Rennekamp]]
 
* ...add your name here...
 
* ...add your name here...
  
Cross-distribution efforts:
+
== Sagemath Fedora package ==
 +
'''The package "{{package|sagemath}}" is now available for Fedora 18 or newer.
 +
'''
 +
{|border="2" cellpadding="2" cellspacing="0"
 +
!Name||Upstream||Review Request || Status
 +
|-
 +
| {{package|sagemath}} || [http://sagemath.org sagemath] || [https://bugzilla.redhat.com/show_bug.cgi?id=877651 #877651] || {{result|pass}}
 +
|-
 +
|}
  
* Debian: [http://qa.debian.org/developer.php?login=tabbott@mit.edu Tim Abbott's list of SAGE-related Debian packages]. Some of these Debian packages may include some patches for the dependencies that may be required for SAGE that have not yet been pushed upstream (older unmaintained wiki page http://wiki.sagemath.org/DebianSAGE)
+
== Dependencies (for which there is a separate upstream) ==
* PcLinuxOS: http://www.mypclinuxos.com/forum/index.php?topic=1509.msg13532#msg13532
+
SageMath calls the packages they integrate an "spkg" (Sage package). Since the goal of the project is to integrate as many third-party products as possible, dependencies aren't always updated along with upstream.
 +
===Missing required components===
  
On fedora-devel KevinKofler points out that:
+
(If you are working on packaging a component or have filed a review request bug, please note it or link to something here.)
  
<pre>
+
{|border="2" cellpadding="2" cellspacing="0"
One problem will be that they're bundling many third-party components which should
+
!Name||Upstream||Review Request || Status
be packaged separately:</pre> http://sage.math.washington.edu/sage/doc/html/inst/intro.html
+
|-
  
<pre>So the first step is to track down which of these dependencies are in Fedora
+
<!-- |cliquer || [http://users.tkk.fi/pat/cliquer.html cliquer] || [https://bugzilla.redhat.com/show_bug.cgi?id=825494 #825494] Missing in f18 -->
already, whether they need any patches to work with SAGE, whether they are
+
|-
build-time (BuildRequires) dependencies, run-time (Requires) dependencies or
 
both, whether they're required or optional and package those which are not in
 
Fedora yet.
 
</pre>
 
  
He suggests the following order:
+
|lrcalc || [http://math.rutgers.edu/~asbuch/lrcalc lrcalc] || [https://bugzilla.redhat.com/show_bug.cgi?id=909510 #909510] Build Requires
 +
|-
  
#package required build-time dependencies
+
|coin-or-CoinUtils || [http://projects.coin-or.org/CoinUtils CoinUtils] || [https://bugzilla.redhat.com/show_bug.cgi?id=894585 #894585] Build Requires
#package required run-time dependencies
+
|-
#package as many optional build-time dependencies as possible
 
#package SAGE itself
 
#package optional run-time dependencies (and decide on a case by case basis whether it makes sense to add them as actual Requires: dependencies to the package or not)
 
  
''Required'' components that SAGE ships with: http://sagemath.org/packages/standard/
+
|coin-or-Osi || [http://projects.coin-or.org/Osi Osi] || [https://bugzilla.redhat.com/show_bug.cgi?id=894586 #894586] Build Requires
 +
|-
  
''Optional'' components that SAGE ships with: http://sagemath.org/packages/optional/
+
|coin-or-Clp || [http://projects.coin-or.org/Clp Clp] || [https://bugzilla.redhat.com/show_bug.cgi?id=894587 #894587] Build Requires
 +
|-
  
(a manual list with descriptions which may vary somewhat with respect to the above is at http://sagemath.org/links-components.html) (See also: http://wiki.sagemath.org/days6/sprint/debian)
+
|coin-or-Cgl || [http://projects.coin-or.org/Cgl Cgl] || [https://bugzilla.redhat.com/show_bug.cgi?id=894588 #894588] Build Requires
 +
|-
  
== Dependencies (for which there is a separate upstream) ==
+
|coin-or-Cbc || [http://projects.coin-or.org/Cbc Cbc] || [https://bugzilla.redhat.com/show_bug.cgi?id=894597 #894597] Build Requires
 +
|-
  
===Missing required components===
+
|fes || [http://www.lifl.fr/~bouillag/download fes] || [https://bugzilla.redhat.com/show_bug.cgi?id=914936 #914936] (Optional) Build Requires
 
+
|-
(If you are working on packaging a component or have filed a review request bug, please note it or link to something here.)
+
|}
  
 +
===Packages that need changes to work with sagemath===
 
{|
 
{|
!Fedora package||Upstream||Review request / status
+
!Fedora package||Upstream||Request for Enhancement / status
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/ ]||[http://www.warwick.ac.uk/staff/J.E.Cremona/ EClib]||[https://bugzilla.redhat.com/show_bug.cgi?id=476398 Review Request]
+
 
 +
<!-- |[http://admin.fedoraproject.org/pkgdb/acls/name/python-matplotlib python-matplotlib] || [http://sourceforge.net/projects/matplotlib matplotlib] || [https://bugzilla.redhat.com/show_bug.cgi?id=837156 #837156] Requires -->
 
|-
 
|-
|||[http://www.g95.org/ G95] || Not needed, we can use gcc-gfortran instead. <ref>From upstream's [http://www.sagemath.org/src/README.txt readme.txt]: "If you're using Fortran on a platform without g95 binaries included with Sage, e.g., Itanium, you must use a system-wide gfortran.". So they support gfortran and even system-wide installations of it.</ref>
+
 
 
|-
 
|-
|||[http://www-groups.dcs.st-and.ac.uk/%7Egap/ GAP] || This is large (they claim you need 500M of disk)
+
|}
 +
 
 +
===Completed (reviewed and built) required components===
 +
{|border="2" cellpadding="2" cellspacing="0"
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name ]||[http://ghmm.sourceforge.net/ GHMM]||[https://bugzilla.redhat.com/show_bug.cgi?id=491490 Review Request]
+
!Fedora package||Upstream||Review request / status||Version in SAGE
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/ ]||[http://ljk.imag.fr/CASYS/LOGICIELS/givaro/ Givaro]||[https://bugzilla.redhat.com/show_bug.cgi?id=475065 Review Request]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/cddlib cddlib]||[http://www.ifor.math.ethz.ch/%7Efukuda/cdd_home Cddlib]||[https://bugzilla.redhat.com/show_bug.cgi?id=464074 Review Request Completed, in Fedora]||094f.p11
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/]||[http://jinja.pocoo.org/1/ Jinja]||[https://bugzilla.redhat.com/show_bug.cgi?id=491491 Review Request]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/cliquer cliquer]||[http://users.tkk.fi/pat/cliquer.html Cliquer]||[https://bugzilla.redhat.com/show_bug.cgi?id=825494 Review Request Completed, in Fedora]||1.2.p11
 
|-
 
|-
|||[http://www.math.union.edu/%7Edpvc/jsMath/ JsMath]||
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/cudd cudd]||[http://vlsi.colorado.edu/~fabio/CUDD/ CUDD]||[https://bugzilla.redhat.com/show_bug.cgi?id=476329 Review Request Completed, in Fedora]||
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/ ]||[http://pmmac03.math.uwaterloo.ca/%7Emrubinst/L_function_public/CODE/ Lcalc]||[https://bugzilla.redhat.com/show_bug.cgi?id=470702 Review Request]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/eclib eclib ]||[http://www.warwick.ac.uk/staff/J.E.Cremona/ EClib]||[https://bugzilla.redhat.com/show_bug.cgi?id=476398 Review Request Completed, in Fedora]||
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/ ]||[http://www.linalg.org/ Linbox]||[https://bugzilla.redhat.com/show_bug.cgi?id=476299 Review Request]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/givaro givaro ]||[http://ljk.imag.fr/CASYS/LOGICIELS/givaro/ Givaro]||[https://bugzilla.redhat.com/show_bug.cgi?id=475065 Review Request Completed, in Fedora]||
 
|-
 
|-
|||[https://networkx.lanl.gov/wiki NetworkX] || [https://bugzilla.redhat.com/show_bug.cgi?id=476350 Review Request]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/python-networkx python-networkx]||[https://networkx.lanl.gov/wiki NetworkX] || [https://bugzilla.redhat.com/show_bug.cgi?id=476350 Review Request Complete, in Fedora]||1.6
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/ ]||[http://polybori.sourceforge.net/ PolyBoRi]||[https://bugzilla.redhat.com/show_bug.cgi?id=476346 Review Request]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/python-cvxopt python-cvxopt]||[http://abel.ee.ucla.edu/cvxopt CVXOPT]||[https://bugzilla.redhat.com/show_bug.cgi?id=466717 Review Request Completed, in Fedora]||1.1.5
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/ ]||[http://pypi.python.org/pypi/ZConfig/ python-ZConfig]||[https://bugzilla.redhat.com/show_bug.cgi?id=476528 Review Request]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/flint flint]||[http://www.flintlib.org/ Flint]||[https://bugzilla.redhat.com/show_bug.cgi?id=473744 Review Request Completed, in Fedora]||[http://www.sagemath.org/packages/standard/flint-1.5.2.p2.spkg flint-1.5.2.p2]
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/ ]||[http://pypi.python.org/pypi/zc.lockfile/ python-zc-lockfile]||[https://bugzilla.redhat.com/show_bug.cgi?id=476525 Review Request]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/libfplll libfpll]||[http://perso.ens-lyon.fr/damien.stehle/english.html#software FpLLL]||[https://bugzilla.redhat.com/show_bug.cgi?id=466655 Review Request Completed, in Fedora]||3.0.12.p2
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/ ]||[http://pypi.python.org/pypi/zdaemon/ python-zdaemon]||[https://bugzilla.redhat.com/show_bug.cgi?id=476527 Review Request]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/genus2reduction genus2reduction]||[http://www.math.u-bordeaux.fr/%7Eliu/G2R/ Genus2reduction]||[https://bugzilla.redhat.com/show_bug.cgi?id=475322 Review Request Completed, in Fedora]||[http://www.sagemath.org/packages/standard/genus2reduction-0.3.p8.spkg genus2reduction-0.3.p8]
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/ ]||[http://www.zope.org/Wikis/ZODB/ python-ZODB3]||[https://bugzilla.redhat.com/show_bug.cgi?id=476600 Review Request]
+
||[http://admin.fedoraproject.org/pkgdb/acls/name/gfan gfan]||[http://www.math.tu-berlin.de/%7Ejensen/software/gfan/gfan.html Gfan]||[https://bugzilla.redhat.com/show_bug.cgi?id=475055 Review Request Completed, in Fedora]||0.4plus.p3
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/ ]||[http://pypi.python.org/pypi/zope.event/ python-zope-event]||[https://bugzilla.redhat.com/show_bug.cgi?id=476526 Review Request]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/ghmm ghmm]||[http://ghmm.sourceforge.net/ GHMM]||[https://bugzilla.redhat.com/show_bug.cgi?id=491490 Review Request Complete, in Fedora]||
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/ ]||[http://pypi.python.org/pypi/zope.proxy/ python-zope-proxy]||[https://bugzilla.redhat.com/show_bug.cgi?id=476523 Review Request]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/gmp-ecm gmp-ecm]||[http://gforge.inria.fr/projects/ecm/ GMP-ECM]||[https://bugzilla.redhat.com/show_bug.cgi?id=473330 Review Request completed, in Fedora]||6.3.p8
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/ ]||[http://pypi.python.org/pypi/zope.testing/ python-zope-testing]||[https://bugzilla.redhat.com/show_bug.cgi?id=476524 Review Request]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/iml iml]||[http://www.cs.uwaterloo.ca/%7Ez4chen/iml.html IML]||[https://bugzilla.redhat.com/show_bug.cgi?id=466692 Review Request Completed, in Fedora]||1.0.1.p14
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/ ]||[http://www.cs.berkeley.edu/%7Eyozo/ Qd]||[https://bugzilla.redhat.com/show_bug.cgi?id=470325 Review Request] [may removed from SAGE soon]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/jmol jmol]||[http://jmol.sourceforge.net/ Jmol]||Already in Fedora: 11.6-8.10506svn||12.3.27.p3
 
|-
 
|-
|||[http://www.singular.uni-kl.de/ Singular] || I (konradm) started working on this but haven't gotten very far.
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/L-function L-function]||[http://pmmac03.math.uwaterloo.ca/%7Emrubinst/L_function_public/CODE/ L-function]||[https://bugzilla.redhat.com/show_bug.cgi?id=470702 Review Request Completed, in Fedora]||1.23.p10
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/ ]||[http://www.maths.bris.ac.uk/%7Emamjw/ Sympow]||[https://bugzilla.redhat.com/show_bug.cgi?id=476406 Review Request]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/linbox linbox]||[http://www.linalg.org/ Linbox]||[https://bugzilla.redhat.com/show_bug.cgi?id=476299 Review Request Completed, in Fedora]||
 
|-
 
|-
|||sphinx, pynac, pygments || [recently added to SAGE, need to check status]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/m4ri m4ri]||[http://m4ri.sagemath.org/ M4RI]||[https://bugzilla.redhat.com/show_bug.cgi?id=470173 Review Request complete, in Fedora]||20120613
|}
 
 
 
===Completed (reviewed and built) required components===
 
{|
 
 
|-
 
|-
!Fedora package||Upstream||Review request / status||Version in SAGE
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/mpfi mpfi]||[http://perso.ens-lyon.fr/nathalie.revol/software.html MPFI]||[https://bugzilla.redhat.com/show_bug.cgi?id=466688 Review Request Completed, in Fedora]||1.5.1
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/cddlib cddlib]||[http://www.ifor.math.ethz.ch/%7Efukuda/cdd_home Cddlib]||[https://bugzilla.redhat.com/show_bug.cgi?id=464074 Review Request Completed, in Fedora]||094b.p3
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/palp palp]||[http://hep.itp.tuwien.ac.at/%7Ekreuzer/CY/CYpalp.html PALP]||[https://bugzilla.redhat.com/show_bug.cgi?id=476351 Review Request Completed, in Fedora]||2.1.p0
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/cudd cudd]||[http://vlsi.colorado.edu/~fabio/CUDD/ CUDD]||[https://bugzilla.redhat.com/show_bug.cgi?id=476329 Review Request Completed, in Fedora]||
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/pynac pynac]||[http://pynac.sagemath.org/ pynac]||[https://bugzilla.redhat.com/show_bug.cgi?id=529198 Review Request Completed, Fedora]||0.2.5
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/python-cvxopt python-cvxopt]||[http://abel.ee.ucla.edu/cvxopt CVXOPT]||[https://bugzilla.redhat.com/show_bug.cgi?id=466717 Review Request Completed, in Fedora]||0.9.p7
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/python-crypto python-crypto]||[http://www.dlitz.net/software/pycrypto/ PyCrypto] || Already packaged in Fedora (python-crypto)||2.1.0
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/flint flint]||[http://www.flintlib.org/ Flint]||[https://bugzilla.redhat.com/show_bug.cgi?id=473744 Review Request Completed, in Fedora]||[http://www.sagemath.org/packages/standard/flint-1.0.21.p0.spkg flint-1.0.21.p0]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/python-polybori python-polybori]||[http://polybori.sourceforge.net/ PolyBoRi]||[https://bugzilla.redhat.com/show_bug.cgi?id=476346 Review Request Complete, in Fedora]||0.8.2
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/libfplll libfpll]||[http://perso.ens-lyon.fr/damien.stehle/english.html#software FpLLL]||[https://bugzilla.redhat.com/show_bug.cgi?id=466655 Review Request Completed, in Fedora]||2.1.6-20071129.p5
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/python-ZODB3 python-ZODB3]||[http://www.zope.org/Wikis/ZODB/ python-ZODB3]||[https://bugzilla.redhat.com/show_bug.cgi?id=476600 Review Request Complete, in Fedora]||
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/genus2reduction genus2reduction]||[http://www.math.u-bordeaux.fr/%7Eliu/G2R/ Genus2reduction]||[https://bugzilla.redhat.com/show_bug.cgi?id=475322 Review Request Completed, in Fedora]||[http://www.sagemath.org/packages/standard/genus2reduction-0.3.p4.spkg genus2reduction-0.3.p4]
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/surf-geometry surf]||[http://surf.sourceforge.net/ Surf]||[https://bugzilla.redhat.com/show_bug.cgi?id=840244 Review Request Completed, in Fedora]||1.1.0
 
|-
 
|-
||[http://admin.fedoraproject.org/pkgdb/packages/name/gfan gfan]||[http://www.math.tu-berlin.de/%7Ejensen/software/gfan/gfan.html Gfan]||[https://bugzilla.redhat.com/show_bug.cgi?id=475055 Review Request Completed, in Fedora]||0.3.p4
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/symmetrica symmetrica]||[http://www.mathe2.uni-bayreuth.de/axel/symneu_engl.html Symmetrica]||[https://bugzilla.redhat.com/show_bug.cgi?id=475410 Review Request Completed, in Fedora]||2.0.p7
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/gmp-ecm gmp-ecm]||[http://gforge.inria.fr/projects/ecm/ GMP-ECM]||[https://bugzilla.redhat.com/show_bug.cgi?id=473330 Review Request completed, in Fedora]||4.2.2.p1.fake
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/sympy sympy]||[http://code.google.com/p/sympy/ Sympy]||[https://bugzilla.redhat.com/show_bug.cgi?id=466660 Review Request Completed, in Fedora]||0.7.1.p0
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/iml iml]||[http://www.cs.uwaterloo.ca/%7Ez4chen/iml.html IML]||[https://bugzilla.redhat.com/show_bug.cgi?id=466692 Review Request Completed, in Fedora]||1.0.1.p11
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/scipy scipy]||[http://www.scipy.org/Weave Weave]||Already in scipy.||0.9.p1
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/jmol jmol]||[http://jmol.sourceforge.net/ Jmol]||Already in Fedora: 11.6-8.10506svn||11.6.16.p0
+
|[http://admin.fedoraproject.org/pkgdb/acls/name/sympow sympow]||[http://www.maths.bris.ac.uk/%7Emamjw/ Sympow]||[https://bugzilla.redhat.com/show_bug.cgi?id=476406 Review Request Complete, in Fedora]||1.018.1.p11
 +
|}
 +
 
 +
== Packages for which SAGE is upstream ==
 +
Latest versions found in https://git.sagemath.org/sage.git/tree/build/pkgs that may be worth packaging as separate SRPMS or different subpackages:
 +
{|border="2" cellpadding="2" cellspacing="0"
 +
| sage || could be named python-sagemath for %{python_sitearch}/sage contents but may not be fully functional without a few "system overrides" in $SAGE_ROOT/site-packages
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/m4ri m4ri]||[http://m4ri.sagemath.org/ M4RI]||[https://bugzilla.redhat.com/show_bug.cgi?id=470173 Review Request complete, in Fedora]||20080909
+
 
 +
| sage_scripts || the main sagemath package requiring all python modules
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/mpfi mpfi]||[http://perso.ens-lyon.fr/nathalie.revol/software.html MPFI]||[https://bugzilla.redhat.com/show_bug.cgi?id=466688 Review Request Completed, in Fedora]||1.3.4-cvs20071125.p7
+
 
 +
| rubiks || there are 3 solvers, but only 2 with functional upstream link, therefore should use sagemath spkg
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/palp palp]||[http://hep.itp.tuwien.ac.at/%7Ekreuzer/CY/CYpalp.html PALP]||[https://bugzilla.redhat.com/show_bug.cgi?id=476351 Review Request Completed, in Fedora]||1.1.p1
+
 
 +
| doc || can be made optional in a sagemath-doc package for users that would prefer to access documentation from elsewhere or are good enough with the python docstrings
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/python-crypto python-crypto]||[http://www.dlitz.net/software/pycrypto/ PyCrypto] || Already packaged in Fedora (python-crypto)||2.0.1.p2
+
 
 +
| extcode || interfaces to other systems or customizations, could/should be made an optional, but a very small package
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/python-transaction python-transaction]||[http://pypi.python.org/pypi/transaction python-transaction]||[https://bugzilla.redhat.com/show_bug.cgi?id=468222 Review Request Completed, in Fedora]||
+
 
 +
| notebook || %{python_sitearch}/sagenb contents, needs some testing, but may be useful if one wants only the command line interface
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/python-zope-filesystem python-zope-filesystem]||||[https://bugzilla.redhat.com/show_bug.cgi?id=476475 Review Request Completed, in Fedora]||
+
 
 +
| elliptic_curves, conway_polynomials, graphs, polytopes_db || ZoDB databases used internally by SAGE
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/python-zope-interface python-zope-interface]||python-zope-interface||||
+
 
 +
| flintqs || spkg because original upstream deprecated it
 
|-
 
|-
|[http://admin.fedoraproject.org/pkgdb/packages/name/symmetrica symmetrica]||[http://www.mathe2.uni-bayreuth.de/axel/symneu_engl.html Symmetrica]||[https://bugzilla.redhat.com/show_bug.cgi?id=475410 Review Request Completed, in Fedora]||2.0.p2
 
|-
 
|[http://admin.fedoraproject.org/pkgdb/packages/name/sympy sympy]||[http://code.google.com/p/sympy/ Sympy]||[https://bugzilla.redhat.com/show_bug.cgi?id=466660 Review Request Completed, in Fedora]||0.6.3.p0
 
|-
 
|[http://admin.fedoraproject.org/pkgdb/packages/name/scipy scipy]||[http://www.scipy.org/Weave Weave]||Already in scipy.||0.4.9
 
 
|}
 
|}
  
== Packages for which SAGE is upstream ==
+
==Cross-distribution efforts==
Latest versions found in http://www.sagemath.org/packages/standard/
+
* Debian: [http://qa.debian.org/developer.php?login=tabbott@mit.edu Tim Abbott's list of SAGE-related Debian packages]. Abbot told [[User:Mrennekamp]] that he stopped working on Debian in 2010. However, it seems that a person within the SageMath project is working on providing SageMath in its own live distro: https://wiki.sagemath.org/SageDebianLive.
* sage
+
* PcLinuxOS: http://www.mypclinuxos.com/forum/index.php?topic=1509.msg13532#msg13532
* sage_scripts
+
* Mandriva: http://svn.mandriva.com/cgi-bin/viewvc.cgi/packages/cooker/sagemath/
* rubiks
+
 
* doc
+
==Historical discussion==
* eclib
+
On fedora-devel KevinKofler points out that:
* examples
+
 
* extcode
+
<pre>
* elliptic_curves, conway_polynomials, graphs, polytopes_db (ZoDB databases used internally by SAGE)
+
One problem will be that they're bundling many third-party components which should
* flintqs (upstream because original upstream deprecated it)
+
be packaged separately:</pre> http://sage.math.washington.edu/sage/doc/html/inst/intro.html
 +
<pre>So the first step is to track down which of these dependencies are in Fedora
 +
already, whether they need any patches to work with SAGE, whether they are
 +
build-time (BuildRequires) dependencies, run-time (Requires) dependencies or
 +
both, whether they're required or optional and package those which are not in
 +
Fedora yet.
 +
</pre>
 +
 
 +
He suggests the following order:
 +
 
 +
#package required build-time dependencies
 +
#package required run-time dependencies
 +
#package as many optional build-time dependencies as possible
 +
#package SAGE itself
 +
#package optional run-time dependencies (and decide on a case by case basis whether it makes sense to add them as actual Requires: dependencies to the package or not)
  
== References ==
+
A wiki for included SageMath packages is at https://wiki.sagemath.org/spkg.
<references/>
+
(See also: http://wiki.sagemath.org/days6/sprint/debian)
  
 
[[Category:SciTech_SIG|SAGE]]
 
[[Category:SciTech_SIG|SAGE]]

Latest revision as of 17:55, 15 February 2017

This is to help document the process to get SageMath (also colloquially called Sage; SAGE is a retired name) (http://www.sagemath.org/), the open-source computer algebra/mathematics framework into Fedora.

People

People interested helping in packaging/reviewing:

Sagemath Fedora package

The package "Package-x-generic-16.pngsagemath" is now available for Fedora 18 or newer.

Name Upstream Review Request Status
Package-x-generic-16.pngsagemath sagemath #877651
Pass pass

Dependencies (for which there is a separate upstream)

SageMath calls the packages they integrate an "spkg" (Sage package). Since the goal of the project is to integrate as many third-party products as possible, dependencies aren't always updated along with upstream.

Missing required components

(If you are working on packaging a component or have filed a review request bug, please note it or link to something here.)

Name Upstream Review Request Status
lrcalc lrcalc #909510 Build Requires
coin-or-CoinUtils CoinUtils #894585 Build Requires
coin-or-Osi Osi #894586 Build Requires
coin-or-Clp Clp #894587 Build Requires
coin-or-Cgl Cgl #894588 Build Requires
coin-or-Cbc Cbc #894597 Build Requires
fes fes #914936 (Optional) Build Requires

Packages that need changes to work with sagemath

Fedora package Upstream Request for Enhancement / status

Completed (reviewed and built) required components

Fedora package Upstream Review request / status Version in SAGE
cddlib Cddlib Review Request Completed, in Fedora 094f.p11
cliquer Cliquer Review Request Completed, in Fedora 1.2.p11
cudd CUDD Review Request Completed, in Fedora
eclib EClib Review Request Completed, in Fedora
givaro Givaro Review Request Completed, in Fedora
python-networkx NetworkX Review Request Complete, in Fedora 1.6
python-cvxopt CVXOPT Review Request Completed, in Fedora 1.1.5
flint Flint Review Request Completed, in Fedora flint-1.5.2.p2
libfpll FpLLL Review Request Completed, in Fedora 3.0.12.p2
genus2reduction Genus2reduction Review Request Completed, in Fedora genus2reduction-0.3.p8
gfan Gfan Review Request Completed, in Fedora 0.4plus.p3
ghmm GHMM Review Request Complete, in Fedora
gmp-ecm GMP-ECM Review Request completed, in Fedora 6.3.p8
iml IML Review Request Completed, in Fedora 1.0.1.p14
jmol Jmol Already in Fedora: 11.6-8.10506svn 12.3.27.p3
L-function L-function Review Request Completed, in Fedora 1.23.p10
linbox Linbox Review Request Completed, in Fedora
m4ri M4RI Review Request complete, in Fedora 20120613
mpfi MPFI Review Request Completed, in Fedora 1.5.1
palp PALP Review Request Completed, in Fedora 2.1.p0
pynac pynac Review Request Completed, Fedora 0.2.5
python-crypto PyCrypto Already packaged in Fedora (python-crypto) 2.1.0
python-polybori PolyBoRi Review Request Complete, in Fedora 0.8.2
python-ZODB3 python-ZODB3 Review Request Complete, in Fedora
surf Surf Review Request Completed, in Fedora 1.1.0
symmetrica Symmetrica Review Request Completed, in Fedora 2.0.p7
sympy Sympy Review Request Completed, in Fedora 0.7.1.p0
scipy Weave Already in scipy. 0.9.p1
sympow Sympow Review Request Complete, in Fedora 1.018.1.p11

Packages for which SAGE is upstream

Latest versions found in https://git.sagemath.org/sage.git/tree/build/pkgs that may be worth packaging as separate SRPMS or different subpackages:

sage could be named python-sagemath for %{python_sitearch}/sage contents but may not be fully functional without a few "system overrides" in $SAGE_ROOT/site-packages
sage_scripts the main sagemath package requiring all python modules
rubiks there are 3 solvers, but only 2 with functional upstream link, therefore should use sagemath spkg
doc can be made optional in a sagemath-doc package for users that would prefer to access documentation from elsewhere or are good enough with the python docstrings
extcode interfaces to other systems or customizations, could/should be made an optional, but a very small package
notebook  %{python_sitearch}/sagenb contents, needs some testing, but may be useful if one wants only the command line interface
elliptic_curves, conway_polynomials, graphs, polytopes_db ZoDB databases used internally by SAGE
flintqs spkg because original upstream deprecated it

Cross-distribution efforts

Historical discussion

On fedora-devel KevinKofler points out that:

One problem will be that they're bundling many third-party components which should
be packaged separately:
http://sage.math.washington.edu/sage/doc/html/inst/intro.html
So the first step is to track down which of these dependencies are in Fedora
already, whether they need any patches to work with SAGE, whether they are
build-time (BuildRequires) dependencies, run-time (Requires) dependencies or
both, whether they're required or optional and package those which are not in
Fedora yet.

He suggests the following order:

  1. package required build-time dependencies
  2. package required run-time dependencies
  3. package as many optional build-time dependencies as possible
  4. package SAGE itself
  5. package optional run-time dependencies (and decide on a case by case basis whether it makes sense to add them as actual Requires: dependencies to the package or not)

A wiki for included SageMath packages is at https://wiki.sagemath.org/spkg. (See also: http://wiki.sagemath.org/days6/sprint/debian)