User:Alexlan

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= Alex Lancaster =
 
= Alex Lancaster =
 
<!--'''Name''': Alex Lancaster
 
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__NOTOC__
 
__NOTOC__
Mainly interested in packaging bioinformatics tools for Fedora. Member of [[SIGs/SciTech]] .
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Mainly interested in packaging bioinformatics tools for Fedora. Member of [[:Category:SciTech SIG|SciTech SIG]].
  
* [http://alexlan.fedorapeople.org/reviews/ specs and SRPMs for packages-in-review on alexlan.fedorapeople.org]  
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* [http://admin.fedoraproject.org/pkgdb/users/packages/alexlan?acls=owner List of packages I own from PackageDB]
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* [http://alexlan.fedorapeople.org/reviews/ Specs and SRPMs for packages-in-review on alexlan.fedorapeople.org]  
 
* Fedora Account System: alexlan
 
* Fedora Account System: alexlan
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* I am also  an [http://rpmfusion.org RPM Fusion]  [http://rpmfusion.org/AlexLancaster maintainer].
  
 
== Useful links ==
 
== Useful links ==
*[[PackageMaintainers/CommonRpmlintIssues]] , [[Packaging/Python]] , [[Packaging/Perl]], [[PackagingDrafts/Perl]] ,  [[PackageMaintainers/NewPackageProcess]] , [[Infrastructure/UpdatesSystem/Bodhi-info-DRAFT]]
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*[https://fedoraproject.org/w/index.php?title=Special:Watchlist&action=edit My Watchlist]
* Track my upstream CPAN packages: http://fedora.biggerontheinside.net/perl/alexlan.html
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*[[Common Rpmlint issues]] , [[Packaging:Python]] , [[Packaging:Perl]], [[Packaging:Perl]] ,  [[New package process for existing contributors|NewPackageProcess]] , [[Infrastructure/UpdatesSystem/Bodhi-info-DRAFT]], [[Branch Freeze Policy]]
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* Track my Perl CPAN packages upstream: http://perl.biggerontheinside.net/users/show/alexlan
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* RPM macros and conditional builds: http://rpm.org/api/4.4.2.2/conditionalbuilds.html
  
 
== Bioinformatics packages ==
 
== Bioinformatics packages ==
  
* [http://www.bioperl.org/ bioperl]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 review request] ), bioperl-run ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=236877 review request] ) [in repo]  and dependencies:
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===In repository===
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* [http://www.bioperl.org/ bioperl]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 review request] ), bioperl-run ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=236877 review request] ) [in repo]  and dependencies:
 
*(Note that the below were based upon packages originally submitted by HunterMatthews that were reviewed and approved but never built)
 
*(Note that the below were based upon packages originally submitted by HunterMatthews that were reviewed and approved but never built)
 
**perl-SVG ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=232193 review request] ) [in repo]  
 
**perl-SVG ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=232193 review request] ) [in repo]  
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**perl-AutoClass ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234568 review request] ) [in repo]  
 
**perl-AutoClass ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234568 review request] ) [in repo]  
 
*(Note other deps originally by Hunter: perl-Heap, perl-MIME-Lite, perl-SOAP-Lite were not orphaned, but picked up by other maintainers)
 
*(Note other deps originally by Hunter: perl-Heap, perl-MIME-Lite, perl-SOAP-Lite were not orphaned, but picked up by other maintainers)
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* perl-Bio-Graphics ([https://bugzilla.redhat.com/show_bug.cgi?id=481544 review request]) [in repo] formerly part of bioperl, now a standalone CPAN module as of bioperl 1.6.
 
* [http://www.biopython.org biopython]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=235989 review request] ) [in repo]  
 
* [http://www.biopython.org biopython]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=235989 review request] ) [in repo]  
 
* [http://www.ebi.ac.uk/Wise2/ wise2]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=236158 review request] ) [in repo]  
 
* [http://www.ebi.ac.uk/Wise2/ wise2]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=236158 review request] ) [in repo]  
* [http://www.pypop.org PyPop]  - Python for Population Genomics (I am the primary upstream developer) ([https://bugzilla.redhat.com/show_bug.cgi?id=464460 review request]) [awaiting push to updates-testing]
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* [http://www.pypop.org PyPop]  - Python for Population Genomics (I am the primary upstream developer) ([https://bugzilla.redhat.com/show_bug.cgi?id=464460 review request]) [in repo]
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===In review queue===
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===To be packaged===
 
* [http://www.swarm.org Swarm]  - agent-based modelling toolkit
 
* [http://www.swarm.org Swarm]  - agent-based modelling toolkit
  
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*[[Features/Bioconductor|Bioconductor]]: bioinformatics packages for R.  Many of these packages are now included in Fedora, [[User:Pingou|Pingou]] is trying to make this a Feature.
 
*[[Features/Bioconductor|Bioconductor]]: bioinformatics packages for R.  Many of these packages are now included in Fedora, [[User:Pingou|Pingou]] is trying to make this a Feature.
 
*[http://www.e-cell.org/ E-Cell]: GPL-licensed cell simulator for systems biology
 
*[http://www.e-cell.org/ E-Cell]: GPL-licensed cell simulator for systems biology
[[Category:Homepage]]
 

Revision as of 15:45, 30 November 2011

Alex Lancaster

Mainly interested in packaging bioinformatics tools for Fedora. Member of SciTech SIG.

Useful links

Bioinformatics packages

In repository

In review queue

To be packaged

  • Swarm - agent-based modelling toolkit

Other packages

Ready for review

Other packages I'm interested in maintaining, or helping to maintain

  • SAGE: the open-source computer algebra/mathematics framework (this is a huge package with many dependencies and will require work from multiple maintainers).
  • Bioconductor: bioinformatics packages for R. Many of these packages are now included in Fedora, Pingou is trying to make this a Feature.
  • E-Cell: GPL-licensed cell simulator for systems biology