User:Alexlan

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= Alex Lancaster =
 
= Alex Lancaster =
  
<!--'''Name''': Alex Lancaster
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{{ Template:message/warning | All of my packages are available for other primary maintainers to pickup.  I have to reduce the amount of time I can spend on Fedora, but would like to be kept on as a co-maintainer}}
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Mainly interested in packaging bioinformatics tools for Fedora. Member of ["SIGs/SciTech"] .
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Packages: https://admin.fedoraproject.org/pkgdb/users/packages/alexlan?acls=owner
  
* [http://alexlan.fedorapeople.org/reviews/ specs and SRPMs for packages-in-review on alexlan.fedorapeople.org]  
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__NOTOC__
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Mainly interested in packaging bioinformatics tools for Fedora. Member of [[:Category:SciTech SIG|SciTech SIG]].
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* [http://admin.fedoraproject.org/pkgdb/users/packages/alexlan?acls=owner List of packages I own from PackageDB]
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* [http://alexlan.fedorapeople.org/reviews/ Specs and SRPMs for packages-in-review on alexlan.fedorapeople.org]  
 
* Fedora Account System: alexlan
 
* Fedora Account System: alexlan
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* I am also  an [http://rpmfusion.org RPM Fusion]  [http://rpmfusion.org/AlexLancaster maintainer].
  
 
== Useful links ==
 
== Useful links ==
["PackageMaintainers/CommonRpmlintIssues"] , ["Packaging/Python"] , ["Packaging/Perl"] , ["PackagingDrafts/Perl"] ,  ["PackageMaintainers/NewPackageProcess"] , ["Infrastructure/UpdatesSystem/Bodhi-info-DRAFT"]  
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*[https://fedoraproject.org/w/index.php?title=Special:Watchlist&action=edit My Watchlist]
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*[[Common Rpmlint issues]] , [[Packaging:Python]] , [[Packaging:Perl]], [[Packaging:Perl]] ,  [[New package process for existing contributors|NewPackageProcess]] , [[Infrastructure/UpdatesSystem/Bodhi-info-DRAFT]], [[Branch Freeze Policy]]
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* Track my Perl CPAN packages upstream: http://perl.biggerontheinside.net/users/show/alexlan
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* RPM macros and conditional builds: http://rpm.org/api/4.4.2.2/conditionalbuilds.html
  
 
== Bioinformatics packages ==
 
== Bioinformatics packages ==
  
* [http://www.bioperl.org/ bioperl]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 review request] ), bioperl-run ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=236877 review request] ) [in repo]  and dependencies:
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===In repository===
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* [http://www.bioperl.org/ bioperl]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 review request] ), bioperl-run ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=236877 review request] ) [in repo]  and dependencies:
 
*(Note that the below were based upon packages originally submitted by HunterMatthews that were reviewed and approved but never built)
 
*(Note that the below were based upon packages originally submitted by HunterMatthews that were reviewed and approved but never built)
*perl-SVG ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=232193 review request] ) [in repo]  
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**perl-SVG ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=232193 review request] ) [in repo]  
*perl-GD-SVG ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=232408 review request] ) [in repo]  
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**perl-GD-SVG ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=232408 review request] ) [in repo]  
*perl-XML-Writer ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233585 review request] ) [in repo]  
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**perl-XML-Writer ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233585 review request] ) [in repo]  
*perl-Text-Shellwords ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233584 review request] ) [in repo]  
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**perl-Text-Shellwords ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233584 review request] ) [in repo]  
*perl-Graph ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233588 review request] ) [in repo]  
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**perl-Graph ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233588 review request] ) [in repo]  
 
*(These are newly packaged by me:)
 
*(These are newly packaged by me:)
*perl-Math-Derivative ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233741 review request] ) [in repo]  
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**perl-Math-Derivative ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233741 review request] ) [in repo]  
*perl-Math-Spline ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233742 review request] ) [in repo]  
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**perl-Math-Spline ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233742 review request] ) [in repo]  
*perl-Convert-Binary-C ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233844 review request] ) [in repo]  
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**perl-Convert-Binary-C ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233844 review request] ) [in repo]  
*perl-XML-XPathEngine ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233845 review request] ) [in repo]  
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**perl-XML-XPathEngine ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233845 review request] ) [in repo]  
*perl-XML-DOM-XPath ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233846 review request] ) [in repo]  
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**perl-XML-DOM-XPath ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233846 review request] ) [in repo]  
*perl-SVG-Graph ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233848 review request] ) [in repo]  
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**perl-SVG-Graph ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233848 review request] ) [in repo]  
*perl-Post<code></code>Script ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234454 review request] ) [in repo]  
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**perl-Post<code></code>Script ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234454 review request] ) [in repo]  
*perl-Data-Stag ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234457 review request] ) [in repo]  
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**perl-Data-Stag ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234457 review request] ) [in repo]  
*perl-Ace<code></code>Perl ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234569 review request] ) [in repo]  
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**perl-Ace<code></code>Perl ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234569 review request] ) [in repo]  
*perl-Bio-ASN1-Entrez<code></code>Gene ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234571 review request] ) [in repo]  
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**perl-Bio-ASN1-Entrez<code></code>Gene ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234571 review request] ) [in repo]  
*perl-Auto<code></code>Class ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234568 review request] ) [in repo]  
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**perl-AutoClass ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234568 review request] ) [in repo]  
 
*(Note other deps originally by Hunter: perl-Heap, perl-MIME-Lite, perl-SOAP-Lite were not orphaned, but picked up by other maintainers)
 
*(Note other deps originally by Hunter: perl-Heap, perl-MIME-Lite, perl-SOAP-Lite were not orphaned, but picked up by other maintainers)
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* perl-Bio-Graphics ([https://bugzilla.redhat.com/show_bug.cgi?id=481544 review request]) [in repo] formerly part of bioperl, now a standalone CPAN module as of bioperl 1.6.
 
* [http://www.biopython.org biopython]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=235989 review request] ) [in repo]  
 
* [http://www.biopython.org biopython]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=235989 review request] ) [in repo]  
 
* [http://www.ebi.ac.uk/Wise2/ wise2]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=236158 review request] ) [in repo]  
 
* [http://www.ebi.ac.uk/Wise2/ wise2]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=236158 review request] ) [in repo]  
* [http://www.pypop.org PyPop]  - Python for Population Genomics (I am the primary upstream developer)
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* [http://www.pypop.org PyPop]  - Python for Population Genomics (I am the primary upstream developer) ([https://bugzilla.redhat.com/show_bug.cgi?id=464460 review request]) [in repo]
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===In review queue===
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===To be packaged===
 
* [http://www.swarm.org Swarm]  - agent-based modelling toolkit
 
* [http://www.swarm.org Swarm]  - agent-based modelling toolkit
  
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* [http://bibus-biblio.sourceforge.net/ bibus]  bibliography manager for  Open<code></code>Office.org ([https://bugzilla.redhat.com/show_bug.cgi?id=436619 review request] ) [in repo]  
 
* [http://bibus-biblio.sourceforge.net/ bibus]  bibliography manager for  Open<code></code>Office.org ([https://bugzilla.redhat.com/show_bug.cgi?id=436619 review request] ) [in repo]  
 
* latex2emf ([https://bugzilla.redhat.com/show_bug.cgi?id=440211 review request] ), small package to generate an EMF file from LaTeX source, prerequisite for OOoLaTeX extension (see below) [in repo]  
 
* latex2emf ([https://bugzilla.redhat.com/show_bug.cgi?id=440211 review request] ), small package to generate an EMF file from LaTeX source, prerequisite for OOoLaTeX extension (see below) [in repo]  
* [http://ooolatex.sourceforge.net/ OOoLatex]  ([https://bugzilla.redhat.com/show_bug.cgi?id=441027 review request] ) Extension for ["OpenOffice.org"]  to permit the entering and rendering of LaTeX equations directly in Draw/Impress documents.  Depends on libEMF. [in repo]  
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* [http://ooolatex.sourceforge.net/ OOoLatex]  ([https://bugzilla.redhat.com/show_bug.cgi?id=441027 review request] ) Extension for [[OpenOffice.org]]  to permit the entering and rendering of LaTeX equations directly in Draw/Impress documents.  Depends on libEMF. [in repo]
  
 
== Ready for review ==
 
== Ready for review ==
  
== Other packages I'm interested in maintaining ==
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== Other packages I'm interested in maintaining, or helping to maintain ==
  
[[Category:Homepage]]
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*[[SIGs/SciTech/SAGE|SAGE]]: the open-source computer algebra/mathematics framework (this is a huge package with many dependencies and will require work from multiple maintainers).
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*[[Features/Bioconductor|Bioconductor]]: bioinformatics packages for R.  Many of these packages are now included in Fedora, [[User:Pingou|Pingou]] is trying to make this a Feature.
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*[http://www.e-cell.org/ E-Cell]: GPL-licensed cell simulator for systems biology

Latest revision as of 16:25, 25 April 2014

[edit] Alex Lancaster

Important.png
All of my packages are available for other primary maintainers to pickup. I have to reduce the amount of time I can spend on Fedora, but would like to be kept on as a co-maintainer

Packages: https://admin.fedoraproject.org/pkgdb/users/packages/alexlan?acls=owner


Mainly interested in packaging bioinformatics tools for Fedora. Member of SciTech SIG.

[edit] Useful links

[edit] Bioinformatics packages

[edit] In repository

[edit] In review queue

[edit] To be packaged

  • Swarm - agent-based modelling toolkit

[edit] Other packages

[edit] Ready for review

[edit] Other packages I'm interested in maintaining, or helping to maintain

  • SAGE: the open-source computer algebra/mathematics framework (this is a huge package with many dependencies and will require work from multiple maintainers).
  • Bioconductor: bioinformatics packages for R. Many of these packages are now included in Fedora, Pingou is trying to make this a Feature.
  • E-Cell: GPL-licensed cell simulator for systems biology