User:Alexlan

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(Bioinformatics packages: pypop now in repo)
(Bioinformatics packages: split into "in repo" and "to-be-packaged")
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== Bioinformatics packages ==
 
== Bioinformatics packages ==
  
 +
===In repository===
 
* [http://www.bioperl.org/ bioperl]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 review request] ), bioperl-run ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=236877 review request] ) [in repo]  and dependencies:
 
* [http://www.bioperl.org/ bioperl]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 review request] ), bioperl-run ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=236877 review request] ) [in repo]  and dependencies:
 
*(Note that the below were based upon packages originally submitted by HunterMatthews that were reviewed and approved but never built)
 
*(Note that the below were based upon packages originally submitted by HunterMatthews that were reviewed and approved but never built)
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* [http://www.ebi.ac.uk/Wise2/ wise2]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=236158 review request] ) [in repo]  
 
* [http://www.ebi.ac.uk/Wise2/ wise2]  ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=236158 review request] ) [in repo]  
 
* [http://www.pypop.org PyPop]  - Python for Population Genomics (I am the primary upstream developer) ([https://bugzilla.redhat.com/show_bug.cgi?id=464460 review request]) [in repo]
 
* [http://www.pypop.org PyPop]  - Python for Population Genomics (I am the primary upstream developer) ([https://bugzilla.redhat.com/show_bug.cgi?id=464460 review request]) [in repo]
 +
 +
===To be packaged===
 
* [http://www.swarm.org Swarm]  - agent-based modelling toolkit
 
* [http://www.swarm.org Swarm]  - agent-based modelling toolkit
  

Revision as of 03:58, 1 December 2008

Alex Lancaster

Mainly interested in packaging bioinformatics tools for Fedora. Member of SIGs/SciTech .

Useful links

Bioinformatics packages

In repository

To be packaged

  • Swarm - agent-based modelling toolkit

Other packages

Ready for review

Other packages I'm interested in maintaining, or helping to maintain

  • SAGE: the open-source computer algebra/mathematics framework (this is a huge package with many dependencies and will require work from multiple maintainers).
  • Bioconductor: bioinformatics packages for R. Many of these packages are now included in Fedora, Pingou is trying to make this a Feature.
  • E-Cell: GPL-licensed cell simulator for systems biology