User:Alexlan

Alex Lancaster

Mainly interested in packaging bioinformatics tools for Fedora. Member of SIGs/SciTech .

• specs and SRPMs for packages-in-review on alexlan.fedorapeople.org
• Fedora Account System: alexlan

Useful links

PackageMaintainers/CommonRpmlintIssues , Packaging/Python , Packaging/Perl, PackagingDrafts/Perl , PackageMaintainers/NewPackageProcess , Infrastructure/UpdatesSystem/Bodhi-info-DRAFT

Bioinformatics packages

• bioperl (review request ), bioperl-run (review request ) [in repo] and dependencies:
• (Note that the below were based upon packages originally submitted by HunterMatthews that were reviewed and approved but never built)
• perl-SVG (review request ) [in repo]
• perl-GD-SVG (review request ) [in repo]
• perl-XML-Writer (review request ) [in repo]
• perl-Text-Shellwords (review request ) [in repo]
• perl-Graph (review request ) [in repo]
• (These are newly packaged by me:)
• perl-Math-Derivative (review request ) [in repo]
• perl-Math-Spline (review request ) [in repo]
• perl-Convert-Binary-C (review request ) [in repo]
• perl-XML-XPathEngine (review request ) [in repo]
• perl-XML-DOM-XPath (review request ) [in repo]
• perl-SVG-Graph (review request ) [in repo]
• perl-PostScript (review request ) [in repo]
• perl-Data-Stag (review request ) [in repo]
• perl-AcePerl (review request ) [in repo]
• perl-Bio-ASN1-EntrezGene (review request ) [in repo]
• perl-AutoClass (review request ) [in repo]
• (Note other deps originally by Hunter: perl-Heap, perl-MIME-Lite, perl-SOAP-Lite were not orphaned, but picked up by other maintainers)
• biopython (review request ) [in repo]
• wise2 (review request ) [in repo]
• PyPop - Python for Population Genomics (I am the primary upstream developer)
• Swarm - agent-based modelling toolkit

Other packages

• picard (MusicBrainz tagger) (review request ) [in repo]
• libdiscid - dependency for libmusicbrainz/python-musicbrainz2 and also used for picard (review request ) [in repo]
• ESS : Emacs Speaks Statistics (emacs-ess) Emacs add-on package to interface with the statistical packages R, amongst others. (review request ) [in repo]
• bibus bibliography manager for OpenOffice.org (review request ) [in repo]
• latex2emf (review request ), small package to generate an EMF file from LaTeX source, prerequisite for OOoLaTeX extension (see below) [in repo]
• OOoLatex (review request ) Extension for ["OpenOffice.org"] to permit the entering and rendering of LaTeX equations directly in Draw/Impress documents. Depends on libEMF. [in repo]