AmberTools

From FedoraProject

Revision as of 23:22, 20 February 2011 by Rathann (Talk | contribs)

Jump to: navigation, search

This is to help document the process to get AmberTools, a set of tools for Assisted Model Building with Energy Refinement (AMBER) into Fedora.

Bundled packages already in Fedora

Fedora package Version in AmberTools
arpack 2.1
blas
boost
byacc
fftw2
gtkglext
lapack
libXmu
libXpm
netcdf
readline

Bundled packages which should be fine to put in Fedora

Fedora package Upstream Review Request/Status Version in AmberTools
cifparse http://sw-tools.pdb.org/apps/CIFPARSE/source.html
parallel-netcdf http://trac.mcs.anl.gov/projects/parallel-netcdf
ucpp http://code.google.com/p/ucpp/
Wcl http://search.cpan.org/~jhpb/Wcl-2.7.3/ Old review request

Bundled packages which may be problematic to put in Fedora

Name Upstream Status
chamber AmberTools non-free license?
libXraw http://canonical.org/~kragen/Xraw/index.html non-commercial clause in license
leap AmberTools non-free license?
reduce http://kinemage.biochem.duke.edu/software/reduce.php sale restriction?