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< SIGs‎ | SciTech

(autodock done, vina spec available)
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* [http://autodock.scripps.edu/ Autodock] - Suite of automated molecular docking tools
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* [http://vina.scripps.edu/ Autodock Vina] - Tool for drug discovery, molecular docking and virtual screening. A preliminary spec file is [http://arc.liv.ac.uk/downloads/misc/SPECS/autodock-vina.spec available].
* [http://vina.scripps.edu/ Autodock Vina] - Tool for drug discovery, molecular docking and virtual screening
 
 
* [http://copasi.org/ COPASI] - Simulation and analysis of biochemical networks and their dynamics, supports SBML standard for models
 
* [http://copasi.org/ COPASI] - Simulation and analysis of biochemical networks and their dynamics, supports SBML standard for models
 
* [http://www.cytoscape.org/ Cytoscape] - Platform for the analysis and visualization of complex networks, in particular molecular interaction networks and biological pathways
 
* [http://www.cytoscape.org/ Cytoscape] - Platform for the analysis and visualization of complex networks, in particular molecular interaction networks and biological pathways

Revision as of 16:33, 7 June 2014

  • Autodock Vina - Tool for drug discovery, molecular docking and virtual screening. A preliminary spec file is available.
  • COPASI - Simulation and analysis of biochemical networks and their dynamics, supports SBML standard for models
  • Cytoscape - Platform for the analysis and visualization of complex networks, in particular molecular interaction networks and biological pathways
  • GENtle - DNA restriction analysis and cloning tool similar to VectorNTI
  • Integrative Genomics Viewer - java-based graphical genomics viewer (licensed under GPLv2)
  • MIRA - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats.
  • NCBI BLAST and other tools - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
  • NCBI C Toolkit - NCBI libraries and tools for biology applications srpm here
  • NCBI C++ Toolkit - a new generation of NCBI libraries and tools for biology
  • pyQPCR - qPCR analysis tool
  • Staden - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
  • Taverna - Tool for automation of experimental workflows.
  • The WFDB Software Package - Software for viewing, analyzing, and creating recordings of physiologic signals