SIGs/SciTech/BioinformaticsWishList

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(Move here Autodock and Autodock Vina. Delete 2 old entries)
(bwa now in Fedora)
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* [http://autodock.scripps.edu/ Autodock] Suite of automated molecular docking tools
 
* [http://autodock.scripps.edu/ Autodock] Suite of automated molecular docking tools
 
* [http://vina.scripps.edu/ Autodock Vina] Tool for drug discovery, molecular docking and virtual screening
 
* [http://vina.scripps.edu/ Autodock Vina] Tool for drug discovery, molecular docking and virtual screening
* [http://bio-bwa.sourceforge.net/ bwa] - Burrows-Wheeler Alignment Tool for efficient short read alignment ([https://bugzilla.redhat.com/show_bug.cgi?id=597315 Review Request])
+
([https://bugzilla.redhat.com/show_bug.cgi?id=597315 Review Request])
 
* [http://www.cytoscape.org/ Cytoscape] - Platform for the analysis and visualization of complex networks, in particular molecular interaction networks and biological pathways
 
* [http://www.cytoscape.org/ Cytoscape] - Platform for the analysis and visualization of complex networks, in particular molecular interaction networks and biological pathways
 
* [http://hannonlab.cshl.edu/fastx_toolkit/index.html FASTX-Toolkit] - Command line tools for Short-Reads FASTA/FASTQ files preprocessing ([https://bugzilla.redhat.com/show_bug.cgi?id=597307 Review Request])
 
* [http://hannonlab.cshl.edu/fastx_toolkit/index.html FASTX-Toolkit] - Command line tools for Short-Reads FASTA/FASTQ files preprocessing ([https://bugzilla.redhat.com/show_bug.cgi?id=597307 Review Request])

Revision as of 21:49, 24 November 2010

  • Autodock Suite of automated molecular docking tools
  • Autodock Vina Tool for drug discovery, molecular docking and virtual screening

(Review Request)

  • Cytoscape - Platform for the analysis and visualization of complex networks, in particular molecular interaction networks and biological pathways
  • FASTX-Toolkit - Command line tools for Short-Reads FASTA/FASTQ files preprocessing (Review Request)
  • GENtle - DNA restriction analysis and cloning tool similar to VectorNTI
  • Integrative Genomics Viewer - java-based graphical genomics viewer (licensed under GPLv2)
  • MIRA - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats.
  • NCBI BLAST and other tools - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
  • NCBI C Toolkit - NCBI libraries and tools for biology applications srpm here
  • NCBI C++ Toolkit - a new generation of NCBI libraries and tools for biology
  • pyQPCR - qPCR analysis tool
  • Staden - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
  • Taverna - Tool for automation of experimental workflows.