From Fedora Project Wiki

< SIGs‎ | SciTech

Revision as of 22:03, 28 July 2009 by Alexlan (talk | contribs) (restore samtools: inadvertantly removed)

  • bwa - Burrows-Wheeler Alignment Tool.
  • EMBOSS - Hundreds of useful, well documented applications for molecular sequence and other analyses.
  • MIRA - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats.
  • NCBI-BLAST and other tools - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
  • SAMtools - SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. Tools for sorting, merging etc. sam format files.
  • Staden - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
  • Taverna - Tool for automation of experimental workflows.