From Fedora Project Wiki

< SIGs‎ | SciTech

Revision as of 15:34, 24 November 2010 by Nsoranzo (talk | contribs) (Move here Autodock and Autodock Vina. Delete 2 old entries)

  • Autodock Suite of automated molecular docking tools
  • Autodock Vina Tool for drug discovery, molecular docking and virtual screening
  • bwa - Burrows-Wheeler Alignment Tool for efficient short read alignment (Review Request)
  • Cytoscape - Platform for the analysis and visualization of complex networks, in particular molecular interaction networks and biological pathways
  • FASTX-Toolkit - Command line tools for Short-Reads FASTA/FASTQ files preprocessing (Review Request)
  • GENtle - DNA restriction analysis and cloning tool similar to VectorNTI
  • Integrative Genomics Viewer - java-based graphical genomics viewer (licensed under GPLv2)
  • MIRA - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats.
  • NCBI BLAST and other tools - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
  • NCBI C Toolkit - NCBI libraries and tools for biology applications srpm here
  • NCBI C++ Toolkit - a new generation of NCBI libraries and tools for biology
  • pyQPCR - qPCR analysis tool
  • Staden - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
  • Taverna - Tool for automation of experimental workflows.