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Revision as of 08:58, 1 August 2018 by Ankursinha (talk | contribs)

There is a good amount of overlap with other SIGs and Spins and some categories of NeuroFedora can be seen as BigData, Fedora-Medical, ML, Octave and SciTech in general.

Please add software that needs to be packaged to the appropriate table with the status "needs packaging". If a package is in a COPR repository, a status of "COPR" can be used. Once a package is in review, the status should be "In review", and of course, once a package is in the repositories, the final status would be "Packaged".

Please feel free to reorganise the tables as required.

If you use a package that is not available in Fedora yet, please feel free to e-mail us and we'll look into providing it. You can either contact us on the mailing list, the IRC channel, or e-mail us privately too!


Packages for Distributed Computing

Package Summary Status Comment
example Packaged

Packages for Image analysis

Package Summary Status Comment
ctk The CTK core library for Image analysis Packaged
dcm2niix Conver neuroimaging data from NIFTI format to DICOM Packaged
isis Framework to access a large variety of image libraries Needs import
libminc Library to work with the MINC file format Packaged
python-nibabel Python package to access a cacophony of neuro-imaging file formats Packaged
python-pydicom Read, modify, and write DICOM files with Python Packaged
rubygem-nifti Pure-ruby library for handling NIfTI data in Ruby Packaged

Packages for Data Analysis

Package Summary Status Comment
python-mne Magnetoencephalography (MEG) and Electroencephalography (EEG) data analysis Packaged
python-pyactivetwo Python library for reading signal from BioSemi ActiveTwo EEG device Packaged


Packages for Modeling of neural systems

Package Summary Status Comment
NEST neural simulator The neural simulation tool In review, needs work 1273579
Brian The Brian spiking neural simulator Needs packaging, dead review 1098754
PyNN A Python package for simulator independent specification of neuronal network models Review ready, needs deps 1150105
The NEURON simulator Empirically based simulations of neurons and networks of neurons Needs packaging, dead review 1249094
example Packaged

Misc Libraries/Utilities

Package Summary Status Comment
python-neo Represent electrophysiology data in Python Packaged
DiffusionKurtosisFit Reconstruct Diffusion Kurtosis tensor from Diffusion Weighted MRI Packaged
getdp Finite element solver Packaged
gifticlib Refernce IO implementation and tools of the GIFTI XML based file format for cortical surface data Packaged
nipy-data Test data and brain templates for nipy Packaged
openigtlink Reference implementation of OpenIGTLink: a set of message formats and protocols used for data exchange over a local area network Packaged
petpvc Tools for partial volume correction (PVC) in positron emission tomography (PET) Packaged
python-amico Relationships backed by Redis Packaged
python-baker Easy, powerful access to Python functions from the command line Packaged
python-citeproc-py Citations and bibliography formatter Packaged
python-gradunwarp Gradient Unwarping Packaged
python-h5io Read and write simple Python objects using HDF5 Packaged
python-interfile Python module for read/write/parse interfile Packaged
python-klusta Spike detection and automatic clustering for spike sorting Packaged
python-lazyarray A lazily-evaluated numerical array class Packaged
python-moss Assorted utilities for neuroimaging and cognitive science Packaged
python-nixio Python bindings for NIX, the Neuroscience Exchange Format Packaged
python-pydotplus Python interface to Graphviz's Dot language Packaged
python-PyLink Universal communication interface using File-Like API Packaged
python-pyoptical Pure Python interface to OptiCAL Packaged
python-pyriemann Covariance matrices manipulaton and Biosignal classification Packaged
python-pyxid Python library for interfacing with Cedrus XID and StimTracker devices Packaged
python-quantities Support for physical quantities with units, based on numpy Packaged
python-simplewrap Easy to use wrappers generator for C libraries based on ctypes Packaged
python-tabulate Pretty-print tabular data in Python, a library and a command-line utility Packaged
python-transforms3d 3 dimensional spatial transformations Packaged
texlive The LaTeX typesetting system for academic writing Packaged
python-grabbit Get grabby with file trees! Packaged
python-cma Covariance Matrix Adaptation Evolution Strategy numerical optimizer Packaged